PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019267
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 594aa    MW: 65070.5 Da    PI: 5.4238
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019267genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.2e-30342400259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  DCAR_019267 342 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGNHNHP 400
                  7***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-33326402IPR003657WRKY domain
SuperFamilySSF1182901.12E-27334402IPR003657WRKY domain
PROSITE profilePS5081129.792336402IPR003657WRKY domain
SMARTSM007741.0E-36341401IPR003657WRKY domain
PfamPF031061.1E-26343400IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MAQGSGLSID PPSSHLLFTC SLSSDHPQDL SLRHRHKLRL EPSIQQLMDC PKGPSTIQFP  60
VNLNCTTADH DHDQDQERDE DRCFKSDEKR PVIDEMDFFA SKKDDEDHDH IAETDGDDQK  120
DGLCGPQHFN VNTGLHLLTT NTSSDQSIVD DGVSSSSEER RVKSELAVLH AELERMNSEN  180
QRLRDMVDEV TNNYNNLQMH LVTFMQQQQQ QKADDNEVEA DDDGGNNSKG EKFVRQNSMR  240
NTVPRQFIDL AVGGGSNDET TDQEPSLSSS EGRDPSHSRM SKQKQDDLYR ETDSPNHGSP  300
HWGGSNKVSR LNPSKEVDQA TEATIRKARV SVRARSEAPM ITDGCQWRKY GQKMAKGNPC  360
PRAYYRCTMA AGCPVRKQVQ RCAEDRTILI TTYEGNHNHP LPPAAMAMAS TTSSAARMLL  420
SGSMPSADGI INSNLLARTL LPCSSSMATI SASAPFPTVT LDLTQSPNPL QQLQRPQNQF  480
QLPFANPQQS PNSPAALLPQ IFTQALYNQS KFSGLQMSSH DTDANQALGF PPMHNQAQPG  540
TMADTVNALT SDPNFTAALA AALSSMFGGT SHANNSTNNN ANVTTSTSNN NSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-22328404176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006364165.10.0PREDICTED: WRKY transcription factor 6-like
SwissprotQ9C5191e-142WRKY6_ARATH; WRKY transcription factor 6
TrEMBLM1B7H20.0M1B7H2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000388520.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9452492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-116WRKY family protein